PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569971.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 367aa    MW: 39729.8 Da    PI: 8.982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-115478327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++C +++rtG+C yG+rC+F+H++
  XP_012569971.1 54 VPNCVYYMRTGFCGYGGRCRFNHPR 78
                    689********************96 PP

2zf-CCCH42.31.3e-1398123227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_012569971.1  98 GEPPCQYYLKTGTCKFGASCKFHHPK 123
                     579*********************96 PP

3zf-CCCH38.12.5e-12144169227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G +CkF+H++
  XP_012569971.1 144 GEKECSYYLKTGQCKFGVTCKFHHPQ 169
                     7899********************97 PP

4zf-CCCH36.39.4e-12300326127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++++rtG Ck+G  C+++H++
  XP_012569971.1 300 PGEPDCQYYLRTGDCKFGLACRYHHPQ 326
                     5789*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-45178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2395179IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-85478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-65480IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-55778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05196124IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-796123IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-1198123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84142170IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5142169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4148168IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727299327IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4305327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDLYGRSPTR NGSNPVNQHE WRSPDAVLGE SMWHLTLGGG GGGGGESYPE RHGVPNCVYY  60
MRTGFCGYGG RCRFNHPRDR AAVAAAVRAT GDYPERLGEP PCQYYLKTGT CKFGASCKFH  120
HPKNGGGYLS QAPLNIYGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP AGTSMPASAP  180
QFYQQVQSPT VPLPDQYGGA STSLRVARPP VLPGSYVQGA YGPVLLSPGV VPFPGWSPYS  240
APVSPVLSPG AQPAVGATSL YGVTQLSSST SAFARPYTPL PSSPGPSRSN LQEKVFPERP  300
GEPDCQYYLR TGDCKFGLAC RYHHPQDQVA ARPLLSPIGL PLRPDCPQSL HSNRCPPLKW  360
RNFSFSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569971.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W911e-161C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A072VP950.0A0A072VP95_MEDTR; Uncharacterized protein
STRINGGLYMA02G17260.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-155C3H family protein